\select@language {english}
\contentsline {chapter}{\numberline {1}Introduction}{1}{chapter.2}
\contentsline {section}{\numberline {1.1}Motivation and Objective}{1}{section.3}
\contentsline {section}{\numberline {1.2}Physical Simulations conducted from the Cell Networks}{2}{section.8}
\contentsline {chapter}{\numberline {2}Accelerating Simulations with CUDA Programming Model}{4}{chapter.11}
\contentsline {section}{\numberline {2.1}GPU and Cuda programming model}{4}{section.12}
\contentsline {subsection}{\numberline {2.1.1}Introduction to GPU}{4}{subsection.13}
\contentsline {subsection}{\numberline {2.1.2}Cuda programming model}{5}{subsection.16}
\contentsline {section}{\numberline {2.2}Accelerating simulations by using Cuda}{6}{section.19}
\contentsline {subsection}{\numberline {2.2.1}Data transferring between GPU and CPU}{7}{subsection.22}
\contentsline {section}{\numberline {2.3}Details of GPU implementation of simulations}{8}{section.23}
\contentsline {section}{\numberline {2.4}Performance Measurement}{8}{section.24}
\contentsline {section}{\numberline {2.5}Routing Algorithm in Cuda version}{10}{section.28}
\contentsline {chapter}{\numberline {3}Mixed simulations Based on High Level Architecture}{12}{chapter.32}
\contentsline {section}{\numberline {3.1}High Level Architecture (HLA)}{12}{section.33}
\contentsline {section}{\numberline {3.2}Mixed simulations}{14}{section.38}
\contentsline {subsection}{\numberline {3.2.1}Data exchanged between simulations}{14}{subsection.39}
\contentsline {chapter}{\numberline {4}Performances}{16}{chapter.42}
\contentsline {chapter}{\numberline {5}Discussion and conclusion}{17}{chapter.43}
\contentsline {section}{\numberline {5.1}Obtained knowledge}{17}{section.44}
\contentsline {section}{\numberline {5.2}Mixed simulations tool contribution}{17}{section.45}
\contentsline {section}{\numberline {5.3}Future works}{17}{section.46}
\contentsline {chapter}{\hbox to\@tempdima {\hfil } Bibliography}{20}{chapter*.48}
